diff --git a/build/Citations.hs b/build/Citations.hs
index c0815e1..0c55cc1 100644
--- a/build/Citations.hs
+++ b/build/Citations.hs
@@ -139,14 +139,16 @@ transformInline keyNums (Cite citations _) =
nums = mapMaybe (`Map.lookup` keyNums) keys
in if null nums
then Str ""
- else RawInline "html" (markerHtml (head keys) (head nums) nums)
+ else RawInline "html" (markerHtml keys (head keys) (head nums) nums)
transformInline _ x = x
-markerHtml :: Text -> Int -> [Int] -> Text
-markerHtml firstKey firstNum nums =
- let label = "[" <> T.intercalate "," (map tshow nums) <> "]"
+markerHtml :: [Text] -> Text -> Int -> [Int] -> Text
+markerHtml keys firstKey firstNum nums =
+ let label = "[" <> T.intercalate "," (map tshow nums) <> "]"
+ allIds = T.intercalate " " (map ("ref-" <>) keys)
in " tshow firstNum <> "\">"
- <> " firstKey <> "\" class=\"cite-link\">"
+ <> " firstKey <> "\" class=\"cite-link\""
+ <> " data-cite-keys=\"" <> allIds <> "\">"
<> label <> ""
where tshow = T.pack . show
@@ -196,10 +198,10 @@ entryOrder _ _ = maxBound
-- | Prepend [N] marker to a bibliography entry block.
addNumber :: Int -> Block -> Block
-addNumber n (Div attrs content) =
+addNumber n (Div attrs@(divId, _, _) content) =
Div attrs
( Plain [ RawInline "html"
- ("[" <> T.pack (show n) <> "]") ]
+ (" divId <> "\">[" <> T.pack (show n) <> "]") ]
: content )
addNumber _ b = b
diff --git a/cabal.project.freeze b/cabal.project.freeze
index 587ccc6..b0fe771 100644
--- a/cabal.project.freeze
+++ b/cabal.project.freeze
@@ -49,7 +49,7 @@ constraints: any.Glob ==0.10.2,
any.conduit ==1.3.6.1,
any.conduit-extra ==1.3.8,
any.containers ==0.6.7,
- any.contravariant ==1.5.5,
+ any.contravariant ==1.5.6,
any.cookie ==0.5.0,
any.crypton ==1.0.4,
any.crypton-connection ==0.4.5,
@@ -113,7 +113,7 @@ constraints: any.Glob ==0.10.2,
any.lifted-base ==0.2.3.12,
any.lrucache ==1.2.0.1,
any.memory ==0.18.0,
- any.mime-types ==0.1.2.0,
+ any.mime-types ==0.1.2.1,
any.monad-control ==1.0.3.1,
any.monad-logger ==0.3.42,
monad-logger +template_haskell,
@@ -142,7 +142,7 @@ constraints: any.Glob ==0.10.2,
any.prettyprinter-ansi-terminal ==1.1.3,
any.primitive ==0.9.1.0,
any.process ==1.6.19.0,
- any.psqueues ==0.2.8.2,
+ any.psqueues ==0.2.8.3,
any.random ==1.2.1.3,
any.recv ==0.1.1,
any.regex-base ==0.94.0.3,
@@ -153,7 +153,7 @@ constraints: any.Glob ==0.10.2,
any.rts ==1.0.2,
any.safe ==0.3.21,
any.safe-exceptions ==0.1.7.4,
- any.scientific ==0.3.8.0,
+ any.scientific ==0.3.8.1,
any.semialign ==1.3.1,
any.semigroupoids ==6.0.2,
any.serialise ==0.2.6.1,
@@ -215,7 +215,7 @@ constraints: any.Glob ==0.10.2,
any.unordered-containers ==0.2.20.1,
any.utf8-string ==1.0.2,
any.uuid-types ==1.0.6,
- any.vault ==0.3.1.5,
+ any.vault ==0.3.1.6,
any.vector ==0.13.2.0,
any.vector-algorithms ==0.9.1.0,
any.vector-stream ==0.1.0.1,
diff --git a/data/bibliography.bib b/data/bibliography.bib
index 544f9a2..4cfa752 100644
--- a/data/bibliography.bib
+++ b/data/bibliography.bib
@@ -197,3 +197,285 @@
year = {2022},
publisher = {University of Chicago Press}
}
+
+% ── ICD Embeddings Preprint ─────────────────────────────────────────────────
+
+@misc{cms_hrrp,
+ author = {{Centers for Medicare \& Medicaid Services}},
+ title = {Hospital Readmissions Reduction Program ({HRRP})},
+ url = {https://www.cms.gov/medicare/payment/prospective-payment-systems/acute-inpatient-pps/hospital-readmissions-reduction-program-hrrp}
+}
+
+@article{charlson1987,
+ author = {Charlson, M. E. and Pompei, P. and Ales, K. L. and MacKenzie, C. R.},
+ title = {A new method of classifying prognostic comorbidity in longitudinal studies: development and validation},
+ journal = {Journal of Chronic Diseases},
+ year = {1987},
+ volume = {40},
+ number = {5},
+ pages = {373--383}
+}
+
+@article{elixhauser1998,
+ author = {Elixhauser, A. and Steiner, C. and Harris, D. R. and Coffey, R. M.},
+ title = {Comorbidity measures for use with administrative data},
+ journal = {Medical Care},
+ year = {1998},
+ volume = {36},
+ number = {1},
+ pages = {8--27}
+}
+
+@article{deschepper2020,
+ author = {Deschepper, Mathieu and Eeckloo, Kristof and Vogelaers, Dominique and Waegeman, Willem},
+ title = {Using structured pathology data to predict hospital-wide mortality at admission},
+ journal = {PLoS One},
+ year = {2020},
+ volume = {15},
+ number = {6},
+ pages = {e0235117}
+}
+
+@article{lelay2022,
+ author = {Le Lay, Jonathan and Martin, Sylvain and Mosnier, Arnaud and others},
+ title = {Prediction of hospital readmission of multimorbid patients using machine learning models},
+ journal = {PLoS One},
+ year = {2022},
+ volume = {17},
+ number = {12},
+ pages = {e0279433}
+}
+
+@article{qiao2022,
+ author = {Qiao, Edmund M. and Deng, Jie and Kluger, Harvey M. and Yu, James B. and Gross, Cary P.},
+ title = {Evaluating High-Dimensional Machine Learning Models to Predict Hospital Mortality Among Older Patients With Cancer},
+ journal = {JCO Clinical Cancer Informatics},
+ year = {2022},
+ volume = {6},
+ pages = {e2100186}
+}
+
+@article{davis2022,
+ author = {Davis, Steve and Borah, Michael F. and Hansen, Justin and Malin, Bradley and Robinson, Jonathan and Turchin, Alexander},
+ title = {Effective hospital readmission prediction models using machine-learned features},
+ journal = {BMC Health Services Research},
+ year = {2022},
+ volume = {22},
+ number = {1},
+ pages = {1415}
+}
+
+@article{harerimana2021,
+ author = {Harerimana, Gaspard and Kim, Jong Wook and Jang, Beakcheol},
+ title = {A deep attention model to forecast the Length Of Stay and the in-hospital mortality right on admission from {ICD} codes and demographic data},
+ journal = {Journal of Biomedical Informatics},
+ year = {2021},
+ volume = {118},
+ pages = {103778}
+}
+
+@article{matsui2022,
+ author = {Matsui, Hiroki and Yasunaga, Hideo and Fushimi, Kiyohide and Homma, Yuichi},
+ title = {Development of Deep Learning Models for Predicting In-Hospital Mortality Using an Administrative Claims Database: Retrospective Cohort Study},
+ journal = {JMIR Medical Informatics},
+ year = {2022},
+ volume = {10},
+ number = {2},
+ pages = {e27936}
+}
+
+@article{nguyen2017,
+ author = {Nguyen, Phuoc and Tran, Truyen and Wickramasinghe, Nilmini and Venkatesh, Svetha},
+ title = {{Deepr}: A Convolutional Net for Medical Records},
+ journal = {IEEE Journal of Biomedical and Health Informatics},
+ year = {2017},
+ volume = {21},
+ number = {1},
+ pages = {22--30}
+}
+
+@misc{ahrq_elixhauser,
+ author = {{Agency for Healthcare Research and Quality}},
+ title = {Elixhauser Comorbidity Software Refined for {ICD-10-CM}},
+ url = {https://www.hcup-us.ahrq.gov/toolssoftware/comorbidityicd10/comorbidity_icd10.jsp}
+}
+
+@article{fernando2019,
+ author = {Fernando, Dulith T. and Berecki-Gisolf, Janneke and Newstead, Stuart and Ansari, Zul},
+ title = {Effect of comorbidity on injury outcomes: a review of existing indices},
+ journal = {Annals of Epidemiology},
+ year = {2019},
+ volume = {36},
+ pages = {5--14}
+}
+
+@article{quan2005,
+ author = {Quan, Hude and Sundararajan, Vijaya and Halfon, Patricia and others},
+ title = {Coding algorithms for defining comorbidities in {ICD-9-CM} and {ICD-10} administrative data},
+ journal = {Medical Care},
+ year = {2005},
+ volume = {43},
+ number = {11},
+ pages = {1130--1139}
+}
+
+@article{deyo1992,
+ author = {Deyo, Richard A. and Cherkin, Daniel C. and Ciol, Marcia A.},
+ title = {Adapting a clinical comorbidity index for use with {ICD-9-CM} administrative databases},
+ journal = {Journal of Clinical Epidemiology},
+ year = {1992},
+ volume = {45},
+ number = {6},
+ pages = {613--619}
+}
+
+@article{quan2011,
+ author = {Quan, Hude and Li, Bing and Couris, Chantal M. and others},
+ title = {Updating and validating the {Charlson} comorbidity index and score for risk adjustment in hospital discharge abstracts using data from 6 countries},
+ journal = {American Journal of Epidemiology},
+ year = {2011},
+ volume = {173},
+ number = {6},
+ pages = {676--682}
+}
+
+@misc{stagg2006,
+ author = {Stagg, Vince},
+ title = {{CHARLSON}: {Stata} module to calculate {Charlson} index of comorbidity},
+ year = {2006},
+ publisher = {Boston College Department of Economics}
+}
+
+@inproceedings{zaheer2017,
+ author = {Zaheer, Manzil and Kottur, Satwik and Ravanbakhsh, Siamak and Poczos, Barnabas and Salakhutdinov, Ruslan and Smola, Alexander},
+ title = {Deep Sets},
+ booktitle = {Advances in Neural Information Processing Systems},
+ year = {2017},
+ volume = {30}
+}
+
+@inproceedings{abadi2016,
+ author = {Abadi, Mart{\'i}n and Barham, Paul and Chen, Jianmin and others},
+ title = {{TensorFlow}: A System for Large-Scale Machine Learning},
+ booktitle = {Proceedings of the 12th {USENIX} Symposium on Operating Systems Design and Implementation},
+ year = {2016},
+ pages = {265--283}
+}
+
+@article{youden1950,
+ author = {Youden, W. J.},
+ title = {Index for rating diagnostic tests},
+ journal = {Cancer},
+ year = {1950},
+ volume = {3},
+ number = {1},
+ pages = {32--35}
+}
+
+@article{delong1988,
+ author = {DeLong, Elizabeth R. and DeLong, David M. and Clarke-Pearson, Daniel L.},
+ title = {Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach},
+ journal = {Biometrics},
+ year = {1988},
+ volume = {44},
+ number = {3},
+ pages = {837--845}
+}
+
+@inproceedings{sundararajan2017,
+ author = {Sundararajan, Mukund and Taly, Ankur and Yan, Qiqi},
+ title = {Axiomatic Attribution for Deep Networks},
+ booktitle = {Proceedings of the 34th International Conference on Machine Learning},
+ year = {2017},
+ pages = {3319--3328}
+}
+
+@article{joynt2013,
+ author = {Joynt, Karen E. and Jha, Ashish K.},
+ title = {Characteristics of hospitals receiving penalties under the {Hospital Readmissions Reduction Program}},
+ journal = {JAMA},
+ year = {2013},
+ volume = {309},
+ number = {4},
+ pages = {342--343}
+}
+
+@article{desai2016,
+ author = {Desai, Nihar R. and Ross, Joseph S. and Kwon, Jin Yul and others},
+ title = {Association Between Hospital Penalty Status Under the {Hospital Readmission Reduction Program} and Readmission Rates for Target and Nontarget Conditions},
+ journal = {JAMA},
+ year = {2016},
+ volume = {316},
+ number = {24},
+ pages = {2647--2656}
+}
+
+@article{zuckerman2017,
+ author = {Zuckerman, Rachael B. and Sheingold, Steven H. and Orav, E. John and Ruhter, Jordan and Epstein, Arnold M.},
+ title = {Effect of a Hospital-wide Measure on the Readmissions Reduction Program},
+ journal = {New England Journal of Medicine},
+ year = {2017},
+ volume = {377},
+ number = {16},
+ pages = {1551--1558}
+}
+
+@article{obermeyer2019,
+ author = {Obermeyer, Ziad and Powers, Brian and Vogeli, Christine and Mullainathan, Sendhil},
+ title = {Dissecting racial bias in an algorithm used to manage the health of populations},
+ journal = {Science},
+ year = {2019},
+ volume = {366},
+ number = {6464},
+ pages = {447--453}
+}
+
+@article{kind2014,
+ author = {Kind, Amy J. H. and Jencks, Stephen and Brock, Jim and others},
+ title = {Neighborhood socioeconomic disadvantage and 30-day rehospitalization: a retrospective cohort study},
+ journal = {Annals of Internal Medicine},
+ year = {2014},
+ volume = {161},
+ number = {11},
+ pages = {765--774}
+}
+
+@article{joynt2011,
+ author = {Joynt, Karen E. and Orav, E. John and Jha, Ashish K.},
+ title = {Thirty-day readmission rates for {Medicare} beneficiaries by race and site of care},
+ journal = {JAMA},
+ year = {2011},
+ volume = {305},
+ number = {7},
+ pages = {675--681}
+}
+
+@article{hansen2011,
+ author = {Hansen, Luke O. and Young, Robert S. and Hinami, Keiki and Leung, Albert and Williams, Mark V.},
+ title = {Interventions to reduce 30-day rehospitalization: a systematic review},
+ journal = {Annals of Internal Medicine},
+ year = {2011},
+ volume = {155},
+ number = {8},
+ pages = {520--528}
+}
+
+@article{coleman2006,
+ author = {Coleman, Eric A. and Parry, Carla and Chalmers, Sandra and Min, Sung-joon},
+ title = {The care transitions intervention: results of a randomized controlled trial},
+ journal = {Archives of Internal Medicine},
+ year = {2006},
+ volume = {166},
+ number = {17},
+ pages = {1822--1828}
+}
+
+@article{rudin2019,
+ author = {Rudin, Cynthia},
+ title = {Stop Explaining Black Box Machine Learning Models for High Stakes Decisions and Use Interpretable Models Instead},
+ journal = {Nature Machine Intelligence},
+ year = {2019},
+ volume = {1},
+ number = {5},
+ pages = {206--215}
+}
diff --git a/sample_music.svg b/sample_music.svg
deleted file mode 100644
index b26b1bb..0000000
--- a/sample_music.svg
+++ /dev/null
@@ -1,1044 +0,0 @@
-
diff --git a/static/css/popups.css b/static/css/popups.css
index 4572719..b1da513 100644
--- a/static/css/popups.css
+++ b/static/css/popups.css
@@ -83,6 +83,16 @@
Shows the .csl-entry from the bibliography in-page.
============================================================ */
+.popup-citation-entry {
+ display: block;
+}
+
+.popup-citation-entry + .popup-citation-entry {
+ margin-top: 0.55rem;
+ padding-top: 0.55rem;
+ border-top: 1px solid var(--border);
+}
+
.popup-citation .csl-entry {
font-family: var(--font-sans);
font-size: 0.8rem;
@@ -99,9 +109,16 @@
word-break: break-all;
}
-/* Hide the [N] number badge — already shown in the inline marker */
.popup-citation .ref-num {
- display: none;
+ font-weight: 600;
+ color: var(--text-faint);
+ margin-right: 0.35em;
+ font-variant-numeric: tabular-nums;
+ text-decoration: none;
+}
+
+.popup-citation .ref-num:hover {
+ color: var(--text);
}
/* Epistemic preview popup — content cloned from #epistemic; ep-* styles inherited */
diff --git a/static/js/popups.js b/static/js/popups.js
index 667228c..899ee39 100644
--- a/static/js/popups.js
+++ b/static/js/popups.js
@@ -203,13 +203,20 @@
);
}
- /* 1. Citations — synchronous DOM lookup */
+ /* 1. Citations — synchronous DOM lookup; supports multi-citation groups
+ via data-cite-keys (space-separated list of ref-* IDs). */
function citationContent(target) {
return new Promise(function (resolve) {
- var id = (target.getAttribute('href') || '').slice(1);
- var entry = document.getElementById(id);
- resolve(entry
- ? ''
+ var keysAttr = target.getAttribute('data-cite-keys');
+ var ids = keysAttr
+ ? keysAttr.trim().split(/\s+/)
+ : [(target.getAttribute('href') || '').slice(1)];
+ var parts = ids.map(function (id) {
+ var entry = document.getElementById(id);
+ return entry ? '' : null;
+ }).filter(Boolean);
+ resolve(parts.length
+ ? ''
: null);
});
}
diff --git a/templates/partials/head.html b/templates/partials/head.html
index 2d8cf9b..0e45bfd 100644
--- a/templates/partials/head.html
+++ b/templates/partials/head.html
@@ -28,9 +28,6 @@ $if(search)$
$endif$
-$if(has-citations)$
-
-$endif$
$if(viz)$