169 lines
5.0 KiB
TOML
169 lines
5.0 KiB
TOML
[build-system]
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requires = ["hatchling>=1.25"]
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build-backend = "hatchling.build"
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[project]
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name = "neuropose"
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version = "0.1.0.dev0"
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description = "3D human pose estimation pipeline for clinical movement research, built on MeTRAbs."
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readme = "README.md"
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license = { file = "LICENSE" }
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requires-python = ">=3.11,<3.12"
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authors = [
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{ name = "Liqi Shu", email = "liqi_shu@brown.edu" },
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{ name = "Levi Neuwirth", email = "ln@levineuwirth.org" },
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{ name = "David Man", email = "david_man@brown.edu" },
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{ name = "Praneeth Tummala", email = "praneeth_tummala@brown.edu" },
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]
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maintainers = [
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{ name = "Levi Neuwirth", email = "ln@levineuwirth.org" },
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]
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keywords = [
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"pose-estimation",
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"biomechanics",
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"motion-capture",
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"clinical-research",
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"metrabs",
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]
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classifiers = [
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"Development Status :: 2 - Pre-Alpha",
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"Intended Audience :: Science/Research",
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"License :: OSI Approved :: MIT License",
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"Operating System :: POSIX :: Linux",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.11",
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"Topic :: Scientific/Engineering :: Image Recognition",
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"Topic :: Scientific/Engineering :: Medical Science Apps.",
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"Typing :: Typed",
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]
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# Runtime dependencies. Versions intentionally unpinned at this stage: the
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# TensorFlow / MeTRAbs stack is pending a sanity check against the updated
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# upstream MeTRAbs release. Tightened pins will land alongside the MeTRAbs
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# model loader and smoke test.
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dependencies = [
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"typer>=0.12",
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"pydantic>=2.6",
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"pydantic-settings>=2.2",
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"pyyaml>=6.0",
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"numpy>=1.26",
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"opencv-python-headless>=4.9",
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"matplotlib>=3.8",
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"tensorflow>=2.15,<3.0",
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"tensorflow-hub>=0.16",
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]
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[project.optional-dependencies]
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analysis = [
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"fastdtw>=0.3.4",
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"scipy>=1.12",
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"scikit-learn>=1.4",
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"sktime>=0.28",
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]
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[project.urls]
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Homepage = "https://git.levineuwirth.org/neuwirth/neuropose"
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Repository = "https://git.levineuwirth.org/neuwirth/neuropose"
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Issues = "https://git.levineuwirth.org/neuwirth/neuropose/issues"
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# CLI entry point will be wired up in commit 7 once src/neuropose/cli.py lands.
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# [project.scripts]
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# neuropose = "neuropose.cli:app"
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# ---------------------------------------------------------------------------
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# Dependency groups (PEP 735). Install a group with `uv sync --group dev` or
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# `uv pip install --group dev`. These are not shipped with the wheel.
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# ---------------------------------------------------------------------------
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[dependency-groups]
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dev = [
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"pytest>=8.0",
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"pytest-cov>=5.0",
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"ruff>=0.8",
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"pyright>=1.1.390",
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"pre-commit>=4.0",
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]
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# ---------------------------------------------------------------------------
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# Ruff (linter + formatter). See https://docs.astral.sh/ruff/rules/ for the
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# meaning of each rule code. The selection is deliberately broader than the
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# Python community default — we want lint noise early rather than cruft late.
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# ---------------------------------------------------------------------------
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[tool.ruff]
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line-length = 100
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target-version = "py311"
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src = ["src", "tests"]
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extend-exclude = ["notebooks"]
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[tool.ruff.lint]
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select = [
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"E", "W", # pycodestyle
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"F", # pyflakes
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"I", # isort
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"B", # flake8-bugbear
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"UP", # pyupgrade
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"SIM", # flake8-simplify
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"RUF", # ruff-specific
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"N", # pep8-naming
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"C4", # flake8-comprehensions
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"PTH", # flake8-use-pathlib
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"PT", # flake8-pytest-style
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"TID", # flake8-tidy-imports
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"NPY", # numpy-specific
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"D", # pydocstyle
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]
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ignore = [
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"D100", # missing module docstring — too strict for internal modules
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"D104", # missing package docstring — too strict for __init__.py
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"D203", # conflicts with D211
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"D213", # conflicts with D212
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]
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[tool.ruff.lint.per-file-ignores]
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"tests/**" = ["D", "PLR2004"]
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"scripts/**" = ["D"]
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"src/neuropose/_*.py" = ["D"]
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[tool.ruff.lint.pydocstyle]
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convention = "numpy"
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[tool.ruff.lint.isort]
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known-first-party = ["neuropose"]
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[tool.ruff.format]
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docstring-code-format = true
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# ---------------------------------------------------------------------------
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# Pyright. "standard" rather than "strict" because the TensorFlow / OpenCV /
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# scikit-learn stubs would generate thousands of unknown-type warnings under
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# strict mode. We tighten toward strict after the MeTRAbs stack is pinned.
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# ---------------------------------------------------------------------------
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[tool.pyright]
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include = ["src", "tests"]
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exclude = [
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"**/__pycache__",
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"**/.venv",
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"notebooks",
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]
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pythonVersion = "3.11"
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typeCheckingMode = "standard"
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reportMissingTypeStubs = "none"
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reportUnknownMemberType = "none"
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reportUnknownArgumentType = "none"
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reportUnknownVariableType = "none"
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reportUnknownParameterType = "none"
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# ---------------------------------------------------------------------------
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# Hatch build configuration.
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# ---------------------------------------------------------------------------
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[tool.hatch.build.targets.wheel]
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packages = ["src/neuropose"]
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[tool.hatch.build.targets.sdist]
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include = [
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"src/neuropose",
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"README.md",
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"LICENSE",
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"AUTHORS.md",
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"CITATION.cff",
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]
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